Table 2.

Quality metrics of variant calls

Sample IDDNA sourceDNA input amountNumber of variantsTransition/transversion ratioHeterozygous/homozygous call ratio% overlapping with dbSNP
PBCTNPLT001Whole blood3 μg430142.591.5998.46
PBCTNPLT002Whole blood3 μg443532.631.5998.45
PBCTNPLT003Whole blood3 μg448682.611.6698.13
PBCTNPLT004Whole blood3 μg523522.622.0398.07
PBCTNPLT005Whole blood3 μg437812.621.6498.46
PBCTNPLT001Whole blood1 μg426102.601.5898.61
PBCTNPLT002Whole blood1 μg442022.641.6098.51
PBCTNPLT003Whole blood1 μg446452.621.6698.19
PBCTNPLT004Whole blood1 μg522062.612.0498.10
PBCTNPLT005Whole blood1 μg438412.621.6698.40
PBCTNPLT001Whole blood0.2 μg425922.591.5798.51
PBCTNPLT002Whole blood0.2 μg440602.641.6098.51
PBCTNPLT003Whole blood0.2 μg447072.611.6598.17
PBCTNPLT004Whole blood0.2 μg521612.612.0398.08
PBCTNPLT005Whole blood0.2 μg436262.621.6498.43
PBCTNPLT001Saliva1 μg427112.591.5898.56
PBCTNPLT002Saliva1 μg443172.641.6098.50
PBCTNPLT003Saliva1 μg449982.611.7198.16
PBCTNPLT004Saliva1 μg522872.622.0498.14
PBCTNPLT005Saliva1 μg437002.621.6498.50