Association between obesogenic variants and colorectal cancer risk in the DACHS population
Variant_dbSNP | Gene | Nucleotide substitution | Positiona/variant | Risk alleleb | OR (95% CI)c | Ptrend | BMI × SNPPinteraction | T2D × SNPPinteraction | Sex × SNPPinteraction |
---|---|---|---|---|---|---|---|---|---|
rs6265 | BDNF | G/A | V66M | G | 1.05 (0.93–1.17) | 0.44 | 0.25 | 0.02e | 0.49 |
rs1919127 | C2orf16 | T/C | V685A | n/s | 1.00 (0.90–1.11) | 0.95 | 0.91 | 0.53 | 0.19 |
rs2679120 | CLIP | G/C | Intron 5 | G | 0.97 (0.88–1.07) | 0.55 | 0.65 | 0.45 | 0.74 |
rs2572106 | FBXL4 | A/C | 5′-UTR | C | 1.04 (0.94–1.15) | 0.42 | 0.88 | 0.85 | 0.36 |
rs9939609 | FTO | T/A | Intron 1 | A | 0.96 (0.87–1.05) | 0.35 | 0.34 | 0.48 | 0.79 |
rs8050136 | FTO | C/A | Intron 1 | A | 0.96 (0.88–1.06) | 0.45 | 0.28 | 0.69 | 0.78 |
rs1260326 | GCKR | C/T | P446L | n/s | 0.91 (0.83–1.00) | 0.06 | 0.18 | 0.18 | 0.35 |
rs10938397 | GNPDA2 | A/G | 5′-UTR | G | 1.10 (1.00–1.21) | 0.04 | 0.85 | 0.16 | 0.34 |
rs4623795 | ITIH5 | G/C | Intron 3 | G | 0.98 (0.86–1.12) | 0.78 | 0.30 | 0.93 | 0.51 |
rs11084753 | KCTD15 | G/A | 3′-UTR | G | 1.05 (0.95–1.16) | 0.35 | 0.79 | 0.23 | 0.71 |
rs1041981 | LTA | C/A | T60N | A | 1.00 (0.91–1.11) | 0.99 | 0.34 | 0.91 | 0.002f |
rs1424233 | MAF | G/A | 5′-UTR | A | 1.00 (0.91–1.10) | 0.92 | 0.27 | 0.54 | 0.81 |
rs17782313 | MC4R | T/C | 3′-UTR | C | 0.93 (0.84–1.04) | 0.19 | 0.22 | 0.45 | 0.39 |
rs17700633 | MC4R | G/A | 3′-UTR | A | 0.91 (0.83–1.01) | 0.08 | 0.73 | 0.71 | 0.98 |
rs12970134 | MC4R | G/A | 3′-UTR | A | 0.94 (0.84–1.04) | 0.22 | 0.41 | 0.76 | 0.25 |
rs10838738 | MTCH2 | A/G | Intron 1 | G | 1.00 (0.91–1.11) | 0.93 | 0.51 | 0.17 | 0.51 |
rs7336049 | MYO16 | C/G | 5′-UTR | G | 0.99 (0.90–1.10) | 0.91 | 0.04d | 0.67 | 0.46 |
rs2568958 | NEGR1 | A/G | 5′-UTR | A | 0.97 (0.88–1.07) | 0.54 | 0.55 | 0.62 | 0.04i |
rs1805081 | NPC1 | A/G | H215R | n/s | 0.98 (0.89–1.07) | 0.62 | 0.08 | 0.05 | 0.03g |
rs6235 | PCSK1 | G/C | S690T | n/s | 0.97 (0.87–1.08) | 0.55 | 0.57 | 0.13 | 0.03k |
rs6232 | PCSK1 | A/G | N221D | n/s | 1.05 (0.85–1.30) | 0.65 | 0.40 | 0.84 | 0.13 |
rs7212681 | RABEP1 | T/G | Intron 1 | G | 1.00 (0.91–1.10) | 0.97 | 0.98 | 0.68 | 0.07 |
rs7498665 | SH2B1 | A/G | T484A | G | 0.93 (0.85–1.02) | 0.13 | 0.37 | 0.98 | 0.03j |
rs10769908 | STK33 | T/C | Intron 5 | C | 1.01 (0.92–1.11) | 0.88 | 0.44 | 0.77 | 0.17 |
rs35859249 | TBC1D1 | C/T | R125W | T | 0.99 (0.84–1.17) | 0.93 | 0.89 | 0.25 | 0.91 |
rs6548238 | TMEM18 | C/T | 3′-UTR | C | 1.00 (0.89–1.13) | 0.99 | 0.32 | 0.95 | 0.04h |
Abbreviations: n/s, not specified; UTR, untranslated region.
↵aPosition denotes the location of an SNP in relation to the gene, i.e., 5′-UTR, 3′-UTR, or within the gene.
↵bBMI-increasing allele according to recent GWAS on obesity risk.
↵cEstimates were adjusted for age, sex, and county of residence. P < 0.05 in bold.
↵dMYO16rs7336049 (ORBMI<25 kg/m2, 0.94; 95% CI, 0.78–1.14; ORBMI≥25<30kg/m2, 1.12; 95% CI, 0.95–1.31; and ORBMI≥30 kg/m2, = 0.75; 95% CI, 0.58–0.99).
↵eBDNFrs6265 (ORDiabetic, 1.50; 95% CI, 1.06–2.13 vs. ORNondiabetic, 0.98; 95% CI, 0.86–1.12).
↵fLTArs1041981 (ORFemale, 0.83; 95% CI, 0.71–0.97 vs. ORMale, 1.14, 95% CI, 1.00–1.30).
↵gNPC1rs1805081 (ORFemale, 0.86; 95% CI, 0.74–1.00 vs. ORMale, 1.06; 95% CI, 0.94–1.20).
↵hTMEM18rs6548238 (ORFemale, 1.17; 95% CI, 0.96–1.42 vs. ORMale, 0.90; 95% CI, 0.77–1.06).
↵iNEGR1rs2568958 (ORFemale, 0.86; 95% CI, 0.75–1.00 vs. ORMale, 1.06; 95% CI, 0.94–1.20).
↵jSH2B1rs7498665 (ORFemale, 0.82; 95% CI, 0.71–0.95 vs. ORMale, 1.01; 95% CI, 0.90–1.15).
↵kPCSK1rs6235 (ORFemale, 1.11; 95% CI, 0.95–1.31 vs. ORMale, 0.88; 95% CI, 0.76–1.01).