Associations between selected SNPs and multiple myeloma risk in the IMMEnSE consortium
IMMEnSE | Original study | ||||||||
---|---|---|---|---|---|---|---|---|---|
Gene | SNP | Cases N (%) | Controls N (%) | OR (95% CI) | P | Ptrend | Best OR (95% CI) | P | Inheritance model |
SERPINE1 | rs2227667 | 0.39c (0.24–0.64) | 0.0002 | Dominant | |||||
A/A | 762 (59.2) | 1,080 (59.6) | 1 (—) | — | 0.930 | ||||
A/G | 457 (35.5) | 623 (34.4) | 1.00 (0.85–1.17) | 0.981 | |||||
G/G | 68 (5.3) | 109 (6.0) | 0.83 (0.60–1.15) | 0.257 | |||||
A/A vs. A/G+G/G | 0.97 (0.84–1.13) | 0.717 | |||||||
A/A+A/G vs. G/G | 0.91 (0.77–1.07) | 0.251 | |||||||
A vs. G | 0.95 (0.84–1.08) | 0.460 | |||||||
CCR7 | rs3136685 | 0.38c (0.22–0.64) | 0.0004 | Dominant | |||||
G/G | 907 (70.2) | 1,275 (70.2) | 1 (—) | — | 0.650 | ||||
A/G | 342 (26.5) | 486 (26.8) | 1.03 (0.87–1.22) | 0.719 | |||||
A/A | 43 (3.3) | 54 (3.0) | 1.17 (0.77–1.80) | 0.458 | |||||
G/G vs. A/G+A/A | 1.04 (0.89–1.23) | 0.588 | |||||||
G/G+A/G vs. A/A | 1.08 (0.87–1.33) | 0.479 | |||||||
G vs. A | 1.05 (0.91–1.21) | 0.486 | |||||||
HGF | rs17501108 | 2.75c (1.69–4.48) | 4.6 × 10−5 | Dominant | |||||
G/G | 984 (77.2) | 1,366 (76.6) | 1 (—) | — | 0.017 | ||||
G/T | 274 (21.5) | 386 (21.7) | 1.03 (0.86–1.24) | 0.718 | |||||
T/T | 16 (1.3) | 30 (1.7) | 0.74 (0.40–1.39) | 0.352 | |||||
G/G vs. G/T+T/T | 1.01 (0.85–1.21) | 0.894 | |||||||
G/G+G/T vs. T/T | 0.86 (0.63–1.17) | 0.340 | |||||||
G vs. T | 0.99 (0.84–1.16) | 0.865 | |||||||
BAX | rs1042265 | 0.40c (0.21–0.78) | 0.007 | Dominant | |||||
C/C | 1,076 (83.4) | 1,469 (81.5) | 1 (—) | — | 0.799 | ||||
C/T | 194 (15.0) | 317 (17.6) | 0.85 (0.70–1.04) | 0.120 | |||||
T/T | 20 (1.6) | 16 (0.9) | 1.89 (0.96–3.74) | 0.065 | |||||
C/C vs. C/T+T/T | 0.90 (0.74–1.09) | 0.293 | |||||||
C/C+C/T vs. T/T | 1.39 (0.99–1.96) | 0.055 | |||||||
C vs. T | 0.96 (0.80–1.45) | 0.648 | |||||||
CASP9 | rs7516435 | 2.59c (1.30–5.15) | 0.007 | Recessive | |||||
A/A | 623 (49.2) | 895 (49.7) | 1 (—) | — | 0.725 | ||||
A/G | 534 (42.1) | 724 (40.3) | 1.05 (0.90–1.23) | 0.514 | |||||
G/G | 110 (8.7) | 179 (10.0) | 0.91 (0.70–1.19) | 0.511 | |||||
A/A vs. A/G+G/G | 1.03 (0.88–1.19) | 0.730 | |||||||
A/A+A/G vs. G/G | 0.94 (0.83–1.07) | 0.388 | |||||||
A vs. G | 0.99 (0.89–1.11) | 0.905 | |||||||
MTHFR | rs1801133 | 1.27 (1.02–1.58) | — | Dominant (meta) | |||||
G/G | 554 (43.8) | 767 (42.7) | 1 (—) | — | 0.721 | ||||
A/G | 525 (41.5) | 787 (43.8) | 0.91 (0.78–1.07) | 0.267 | |||||
A/A | 185 (14.7) | 243 (13.5) | 0.96 (0.77–1.21) | 0.757 | |||||
G/G vs. A/G+A/A | 0.92 (0.80–1.07) | 0.312 | |||||||
G/G+A/G vs. A/A | 1.00 (0.90–1.12) | 0.929 | |||||||
G vs. A | 0.96 (0.86–1.07) | 0.500 | |||||||
mEH | rs2234922 | 5.81 (1.27–35.7) | 0.01 | Recessive | |||||
A/A | 860 (67.0) | 1,150 (63.4) | 1 (—) | — | 0.635 | ||||
A/G | 369 (28.7) | 596 (32.8) | 0.86 (0.74–1.02) | 0.081 | |||||
G/G | 55 (4.3) | 70 (3.8) | 1.14 (0.78–1.66) | 0.502 | |||||
A/A vs. A/G+G/G | 0.89 (0.76–1.04) | 0.155 | |||||||
A/A+A/G vs. G/G | 1.09 (0.91–1.31) | 0.356 | |||||||
A vs. G | 0.94 (0.83–1.07) | 0.378 | |||||||
MTR | rs1805087 | 2.31 (1.38–3.87) | 0.001 | Dominant | |||||
A/A | 858 (67.3) | 1,201 (66.2) | 1 (—) | — | 0.974 | ||||
A/G | 372 (29.2) | 549 (30.3) | 0.97 (0.83–1.14) | 0.734 | |||||
G/G | 45 (3.5) | 63 (3.5) | 1.18 (0.78–1.77) | 0.430 | |||||
A/A vs. A/G+G/G | 0.99 (0.85–1.16) | 0.916 | |||||||
A/A+A/G vs. G/G | 1.09 (0.89–1.33) | 0.402 | |||||||
A vs. G | 1.01 (0.88–1.16) | 0.852 | |||||||
IL1β | rs16944a | 0.057 (0.02–0.18) | 0.0001 | Log-additive | |||||
G/G | 471 (44.1) | 686 (43.6) | 1 (—) | — | 0.522 | ||||
A/G | 461 (43.2) | 718 (45.7) | 0.90 (0.76–1.07) | 0.240 | |||||
A/A | 136 (12.7) | 169 (10.7) | 1.11 (0.86–1.45) | 0.427 | |||||
G/G vs. A/G+A/A | 0.94 (0.80–1.11) | 0.476 | |||||||
G/G+A/G vs. A/A | 1.08 (0.96–1.22) | 0.212 | |||||||
G vs. A | 1.00 (0.89–1.13) | 0.944 | |||||||
TNF-α | rs1800629b | 0.58 (0.39–0.87) | 0.01 | Log-additive | |||||
G/G | 478 (75.9) | 859 (72.7) | 1 (—) | — | 0.187 | ||||
A/G | 143 (22.7) | 289 (24.5) | 0.88 (0.70–1.12) | 0.317 | |||||
A/A | 9 (1.4) | 33 (2.8) | 0.48 (0.22–1.05) | 0.066 | |||||
G/G vs. A/G+A/A | 0.84 (0.67–1.06) | 0.152 | |||||||
G/G+A/G vs. A/A | 0.71 (0.48–1.04) | 0.077 | |||||||
G vs. A | 0.83 (0.67–1.02) | 0.072 | |||||||
TRAF3 | rs12147254 | 0.709 (0.62–0.82) | <0.001 | Dominant | |||||
G/G | 630 (49.1) | 911 (50.5) | 1 (—) | — | 0.644 | ||||
A/G | 536 (41.7) | 712 (39.5) | 1.09 (0.93–1.28) | 0.271 | |||||
A/A | 118 (9.2) | 180 (10.0) | 0.97 (0.75–1.27) | 0.846 | |||||
G/G vs. A/G+A/A | 1.07 (0.92–1.24) | 0.380 | |||||||
G/G+A/G vs. A/A | 0.97 (0.85–1.10) | 0.611 | |||||||
G vs. A | 1.03 (0.92–1.15) | 0.660 |
NOTE: All analyses are adjusted for age (continuous), gender, and region. Differences in the overall number may be due to failure in genotyping. For each SNP, we present the result of analyses of heterozygotes vs. homozygotes for the common allele, homozygotes for the rare allele vs. homozygotes for the common allele, dominant model, recessive model, and per-allele model. The model corresponding to the association reported in the original publication for each SNP is underlined.
↵aFor this SNP, samples collected in Italy were already published and therefore omitted from the analysis.
↵bFor this SNP, samples collected in Italy and Hungary were already published and therefore omitted from the analysis. Samples from Poland were out of HWE and therefore omitted as well.
↵cThe original studies were conducted only in women (8, 9).