Table 5.

Missing genotypes out of 73 attempted

MethodMissing rate (95% confidence interval)CommentsMissing alleles
Knowledge of 3rd allele not necessary
    Sequencing0.055 (0.015, 0.134)4 missingG/T (4)
    Sequenome0.055 (0.015, 0.134)4 missingG/G (2), T/T (2)
    LightCycler0.000 (0.000, 0.049)0 missing
Knowledge of 3rd allele necessary
    Taqman0.041 (0.009, 0.115)3 missingG/T (2), T/T (1)
    PCR0.055 (0.015, 0.134)4 missingG/T (2), G/G (2)
    RFLP0.000 (0.000, 0.049)0 missing
  • NOTE: Failed and unclear genotypes counts were combined to obtain missing genotype counts.