Table 1.

Information on 10 SNPs genotyped on 89 saliva DNA samples and on 81 WGA DNA samples; success rates, Ps for Hardy-Weinberg equilibrium for each assay, and genotypic concordance

SNP identification no.*ChromosomeGene/ProteinSaliva DNA
WGA DNA
Concordance
Success rate of genotype analyses (%)P for Hardy-Weinberg equilibriumSuccess rate of genotype analyses (%)P for Hardy-Weinberg equilibriumWGA DNA vs saliva DNA (%)
Specific SNPs
    rs7463201No gene940.28990.49100
    rs23647312Hypothetical protein DKFZp451M2119940.08910.55100
    rs43069544No gene980.75910.35100
    rs15003209Protein tyrosine phosphatase, receptor type, D1000.79940.64100
    rs378105810BRCA2 and CDKN1A interacting protein940.42960.66100
    rs799436513A kinase (PRKA) anchor protein 11940.996950.29100
    rs146547116Sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)910.52880.5299
    rs811040019Zinc finger protein 543990.08990.49100
    rs74453320Chromosome 20 open reading frame 151910.43960.75100
    rs13984222Eukaryotic translation initiation factor 3, subunit 6 interacting protein990.83990.8599
All 10 SNPs96NA95NA99.7
  • * National Center for Biotechnology Information Reference SNP Cluster Identifier.