Table 5.

TagL1102L1214L1232HOSE1HOSE2ScoresHs.*Description
A. Tags whose expressions are elevated in ovarian carcinoma relative to normal HOSE
*#GTCGGGCCTC71.6539.1822.671.160173,769FOLR1A
*#CTGGAGGCTG9.58.7110.67001149,152RHPN1
GCAACTGTGA7.778.716.67001169,476GAPDH (glyceraldehyde-3-phosphate dehydrogenase)
*#ATTTGTCCCA14.687.625.3300157,301HMGA1
*#ATGACTCAAG37.1254.4124.015.790.870.99239,752NR2F6 (nuclear receptor subfamily 2, group F, member 6)
*#GGAACAAACA8.633.2618.67000.9975,108CD24
*#TTTGTGTCAC13.819.799.3401.730.9815,093CXXC5 (CXXC finger 5)
GGAGCACACA8.632.184000.98193,490FLJ31952 (hypothetical protein FLJ31952)/FLJ34922 (hypothetical protein FLJ34922)
*#CTCGCGCTGG50.078.7132.011.1600.9825,640CLDN3
*TGCTGAATCA14.688.7118.672.321.730.98327,068CCDC6 (coiled-coil domain containing 6)
*#CTTGAGCAAT13.8110.88162.321.730.98848FKBP4 (FK506-binding protein 4, 59 kDa)
TTAAAGGCCG2.599.792.67000.9779,086MRPL3 (mitochondrial ribosomal protein L3)
*#TAATCCTCAA25.0439.1813.3403.460.9678,409COL18A1
AGGGGATTCC9.53.261.33000.9575,412ARMET (arginine-rich, mutated in early-stage tumors)
*#TGGAACTGTA8.639.795.331.160.870.94132,262C10orf4 (chromosome 10 open reading frame 4)
ATGTAGTAGT15.5413.06162.325.190.94406,404HNRPD [heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37 kDa)]
GGGGTGGGGC5.188.715.3300.870.94154,868CAD
*#AAAGTCTAGA8.636.532.671.1600.9482,932CCND1 [PRAD1 (parathyroid adenomatosis 1)]
#TTGATGTACA10.3615.249.343.481.730.93433,581SFRS11 (splicing factor, arginine/serine-rich 11)
*CCCCAGTTGC29.3526.1230.6816.229.520.9374,451CAPNS1 (calpain, small subunit 1)
*#TCCTTGCTTC10.3622.85121.164.330.9394,491FLJ20297
TAGGCCCAAG12.098.719.342.321.730.9378,880ILVBL [ilvB (bacterial acetolactate synthase)-like]
GAGAAATATC1.7311.972.67000.92169,984ZFN638 (zinc finger protein 638)
*#ATCGCTTTCT14.6819.5914.673.486.920.91177,486APP [amyloid β (A4) precursor protein (protease nexin-II, Alzheimer disease)]
*#AAGATTGGTG7.776.53122.3200.911,244CD9 (p24)
B. Tags whose expressions are lower in ovarian carcinoma relative to normal HOSE
CCCAACGCGC00083.4247.591347,939HBA2 (hemoglobin, α2)
GCAAGAAAGT00026.6539.811155,376HBB (hemoglobin, β)
CTTCTTGCCC001.3347.536.341347,939HBA2 (hemoglobin, α2)
ACACAGCAAG00023.1715.581
CCCTTGTCCG0.860026.6520.771127,824na LOC349752
TCTCCATACC0.861.09023.1725.091
ACCCACGTCA0.8601.3327.8120.771400,124JUNB
AGCTTCCACC00011.597.791490,252Transcribed locus, strongly similar to XP_530188.1 LOC457315
CTGTACTTGT0.860063.7229.42175,678FOSB (FBJ murine osteosarcoma viral oncogene homologue B)
GAGTGGCTAC0009.276.921
TTGGTGAAGG10.3618.517.3461.4149.321426,138TMSB4X (thymosin, β4, X chromosome)
ATGGTGGGGG0008.1122.51343,586ZFP36 [zinc finger protein 36, C3H type, homologue (mouse)]
AGATCCCAAG0005.798.65150,813ITLN1 [intelectin 1 (galactofuranose binding)]
TGGAAGGAGG0008.116.061
TAGCCGGGAC0005.797.791107,740KLF2 [Kruppel-like factor 2 (lung)]
TGTGGATGTG0004.6312.111180,878LPL (lipoprotein lipase)
GGGTAGGGGG00034.769.52113,323FOSB [FBJ murine osteosarcoma viral oncogene homologue B (internal tag)]
AGGGCTTCCA56.983769.35134.4141.051458,148RPL10 (ribosomal protein L10)
ATTCTCCAGT35.3939.1844.0185.7489.131406,300RPL23 (ribosomal protein L23)
CTGCTATACG11.2214.159.3441.7138.941180,946RPL5 (ribosomal protein L5)
GCCGTGTCCG21.589.79854.4558.841380,843RPS6 (ribosomal protein S6)
GAGGGAGTTT117.41138.21110.7200.44182.580.9976,064RPL27A (ribosomal protein L27a)
TAGTTGGAAC001.336.9513.850.991,119NR4A1 (nuclear receptor subfamily 4, group A, member 1)
GGGCAGGCGT1.732.18018.5411.250.99501,629IER2 (immediate-early response 2)
GGCCCCTCAC01.091.3331.2811.250.99274,313IGFBP6 (insulin-like growth factor–binding protein 6)
  • NOTE: The tag CTGGAGGCTG matching RHPN1 is listed as an internal tag match in SAGEGenie (http://cgap.nci.nih.gov/SAGE/AnatomicViewer).

  • * Hs. corresponds to UniGene no. Tag counts are expressed as tags per 30,000.

  • Tags also identified as being statistically significant when publicly available tumor and HOSE data were included are identified by * and #, respectively (see text).

  • Blank cells indicate no database match for that SAGE tag. Tag counts are expressed as tags per 30,000.