Table 2.

Tagged SNPs, their location and minor allele frequencies by race/ethnicity and case–control status

SNPChrPositionFunction SNPMinor alleleHispanicsWhitesHispanics vs. Whites
MAF caseMAF controlPMAF caseMAF controlPP casesP controls
MLL 
rs4456287111178034625′ flankG0.190.180.910.240.210.310.200.33
rs62947011117825763IntronA0.090.140.180.190.150.150.020.84
rs933280111117860852Coding exonC0.030.050.400.070.040.060.120.45
rs52554911117863278IntronA0.390.260.0050.380.410.390.83P < 0.0001
rs56278011117867624IntronA0.050.060.640.150.110.130.0030.01
rs207170211117879071Coding exonA0.040.060.350.060.040.140.290.19
rs573971111178986063′-UTRA0.110.150.390.230.170.050.010.34
rs6589664111179100143′ flankA0.420.540.020.280.330.160.004P < 0.0001
rs3741324111179110453′ flankA0.050.090.280.160.130.200.0030.06
CREBBP 
rs21914161637107303′ flankG0.470.420.290.330.360.510.010.09
rs397331637131653′ flankA0.200.170.380.250.270.480.310.0003
rs3751845163718338Coding exonA0.000.020.130.010.000.250.310.02
rs129974163735293Coding exonA0.000.010.220.010.000.260.320.09
rs129963163736148IntronA0.470.530.990.440.450.770.100.03
rs17136507163740546IntronG0.190.220.800.110.130.480.020.003
rs886528163751557IntronG0.330.370.450.430.430.930.070.09
rs3025694163760668Coding exonA0.000.010.220.000.000.690.490.09
rs130005163768349IntronG0.070.060.710.100.110.760.270.01
rs130021163772472IntronG0.280.250.490.320.360.240.400.001
rs130023163773307IntronG0.010.040.140.010.040.060.540.52
rs130024163774317IntronG0.040.030.600.080.100.330.200.0002
rs11076787163792777IntronA0.140.170.470.200.180.500.110.48
rs1296720163813643IntronC0.090.110.490.180.170.690.020.03
rs2530890163844547IntronG0.060.100.200.180.160.480.0020.01
rs2239316163853996IntronG0.290.280.780.260.290.260.470.69
rs25266871638727265′ flankA0.020.030.500.020.030.290.830.62
TOP2A 
rs1696574117357947353′ flankA0.180.120.110.110.100.740.050.32
rs271555517357981503′ flankA0.070.070.900.130.140.700.080.001
rs1369517357987193′ UTRA0.120.150.420.260.260.800.0020.0004
rs115407201735799350Coding exonA0.010.020.440.020.020.970.290.55
rs52581217358288185′ regionG0.370.370.990.200.190.700.0004P < 0.0001
rs1165068017358327625′ flankA0.200.180.700.180.220.290.780.18
rs153036317358363025′ flankG0.390.410.790.220.210.780.0003P < 0.0001
EP300 
rs575822222398161395′ flankG0.280.150.0020.330.340.770.30P < 0.0001
rs482200222398172905′ flankG0.210.220.770.330.370.370.01P < 0.0001
rs57582232239819866IntronG0.130.130.970.240.250.710.01P < 0.0001
rs72869792239828573IntronA0.280.160.0030.340.350.680.24P < 0.0001
rs96115022239861182IntronA0.020.020.620.040.030.570.240.55
rs205512239877954Coding exonG0.500.620.020.300.290.740.0001P < 0.0001
rs205522239880985Coding exonA0.190.200.800.370.360.770.0004P < 0.0001
rs22949762239894654IntronA0.050.050.970.090.100.500.150.003
rs10460882239904329Coding exonC0.020.020.990.020.030.240.770.33

NOTE: Significant P values are in bold.

Chr: Chromosome.