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Special Section |
Departments of 1 Molecular and Cell Biology and 2 Microbiology, University of Washington School of Medicine; and 3 Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington
Requests for reprints: Nina Salama, Human Biology Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Mailstop C3-168, PO Box 19024, Seattle, WA 98109-1024. Phone: 206-667-1540; Fax: 206-667-6524. E-mail: nsalama{at}fhcrc.org
| Abstract |
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| Introduction |
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and leading to considerable cell damage. Another feature distinguishing H. pylori infection from infection with other less pathogenic Helicobacter species is its close contact with host cells. This intimate adherence facilitates the delivery of bacterial toxins that further damage and reprogram host cells. This has led to a prevailing hypothesis where persistent infection by this organism allows continual delivery of virulence factors and induction of a damage-associated immune response. These two processes lead to increased host cell turnover, providing a nutrient-rich colonization niche for the bacteria while putting the host at risk for accumulating genetic and epigenetic changes that lead to the development of cancer. In this review, we focus on recent progress clarifying the complex immune response to this infection, understanding the expression of bacterial virulence genes, and understanding how these proteins influence the host immune responses (summarized in Fig. 1).
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| Innate and Acquired Immune Responses to H. pylori Infection |
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(TNF-
), and INF-
that modulate the strength and kind of immune response activated, predominantly biased toward a Th1 immune response. Several recent studies on the chemokine/cytokine profile induced in the H. pyloriinfected gastric mucosa, as well as the kind of immune cells recruited to the site of infection, have confirmed this bias. Wen et al. (1) have looked at the global inflammatory profile of the gastric mucosa of infected and uninfected patients using microarrays, confirming the previous notion of a Th1-driven response during natural infection of humans.
Linking the Innate and Adaptive Immune Responses
Dendritic cells have been detected in the H. pyloriinfected gastric mucosa. These cells are the link between signals derived from pathogens and other cells of the immune system, such as natural killer cells and T cells, by a variety of mechanisms. Dendritic cells present antigens via MHC class II molecules and induce signal transduction cascades. They also produce B7 and costimulatory molecules that amplify and stabilize the immunologic synapse, modulating the amount of cytokines released, including IL-12, INF-
, and TNF-
. Guiney et al. (2) showed that human dendritic cells respond to H. pylori infection by preferentially producing IL-12 (typical of a Th1 response) rather that IL-6 or IL-10 in vitro. Another study confirmed the production of IL-12 by dendritic cells upon H. pylori infection (3), but also reported increased IL-10 induction. They suggest that moderate induction of this cytokine (more typical of a Th2 response) may be important for the activation of T regulatory cells. H. pylorispecific regulatory T cells can suppress the memory T-cell response to H. pylori in infected individuals (4). Interestingly, it has been reported that a Th2 response might be induced in H. pyloriinfected children (5), suggesting age-specific differences in the nature of the immune response to H. pylori. Further work on dendritic cells showed that H. pyloripulsed dendritic cells can activate natural killer cells and naïve T cells in vitro to become Th1 effector cells and that bacterial membrane proteins likely mediate these effects (6). A final study observed that whereas H. pylori exposure induced apoptosis of human monocytes, dendritic cells were immune, lending further support to a model where dendritic cells play a central role in immune modulation during H. pylori infection (7).
Suppression of the Adaptive Immune Response
It has long been recognized that H. pylori infection induces an active immune response and mechanisms allowing avoidance of this response have also been described. For example, H. pylori is able to interfere with Fas-FasL interactions leading to T-cell death (8). Recently T regulatory cells have emerged as important player in dampening H. pylori specific T-cell responses (4, 9). Activation of this cell population may explain how H. pylori persists for so long in the human stomach despite inducing a strong immune response.
Evasion of Innate Immunity
H. pylori also seem to be armed with mechanisms for protection against innate immune responses. Variations in the H. pylori lipopolysaccharide seem to account for its ability to avoid activation of TLR4. Recently, it has been reported that the main H. pylori flagellin subunit, FlaA, is a less potent activator of TLR5 than FliC of Salmonella typhimurium, both because it does not activate TLR5 well and it is not released to the media (10). Inadequate innate immune recognition of H. pylori might contribute to the failure of the adaptive immune response to clear H. pylori.
In summary, dendritic cells have emerged as a likely player in the activation of a Th1-type response that mediate gastric inflammation. Meanwhile a combination of bacterial avoidance of innate defenses and activation of T regulatory cells act to dampen immune responses and may contribute to the inability of the host to effectively clear the bacteria facilitating the chronic nature of this infection.
| H. pylori Virulence Factors and their Modulation of Host Cell Responses |
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Regulation of Virulence
Sequencing of the H. pylori genome revealed a dearth of transcription factors and regulatory proteins that orchestrate the adaptation of other enteric bacteria to the complex and varied environments of the human host. This, combined with the inability to identify environmental or animal reservoirs of H. pylori, led to proposals that this organism has a limited spectrum of gene expression. A number of recent studies directly tested this by whole-genome transcriptional profiling of the bacteria using gene arrays. The first study queried gene transcription changes over the growth curve in vitro and found a dramatic shift in gene expression at the transition point between log phase and stationary phase (log/stat switch; ref. 12). They observed down-regulation of genes involved in cell growth (ribosomal proteins, transcriptional machinery, and central and intermediate metabolism) and up-regulation of genes involved in stress responses and virulence. One striking group of genes identified consists of genes involved in iron utilization. Sequestration of iron is major host defense and iron acquisition and storage is major challenge facing infecting bacteria. Iron uptake genes, like fecA, were down-regulated, whereas iron storage genes, like the nonheme ferritin (pfr) and napA, were up-regulated as were several iron-containing enzymes. Also up-regulated was the virulence gene cagA. Interestingly, another gene in the pathogenicity island (cag1) that has not been implicated to date in virulence was also highly up-regulated, suggesting that the role of this gene in virulence should be reexamined. Contrary to the prediction of constant gene expression for this organism, this study paints a much more dynamic picture with 40% of the genome expressed at any given time.
A follow-up study sought to directly measure the response of the bacteria to iron limitation and supplementation (13). Because of the profound differences in gene expression in log phase versus stationary phase, transcriptional response to iron limitation were measured under both conditions. Again, using microarray analysis, 138 genes showed expression changes of 2-fold or more. Many genes had growth phasedependent responses. For example, pfr was only induced by iron limitation in stationary phase. Among the pathways induced nitrogen metabolism genes, particularly amiE and amiF showed dramatic changes in expression. These amidases produce ammonia, which is the preferred nitrogen source of H. pylori. Ammonia also causes cell damage and, therefore, could participate in release of iron sequestered in host cells. Virulence genes, including vacA, cagA, and napA, which acts as a bacterioferritin in addition to activating neutrophils, were also induced by iron limitation. This indicates that iron limitation may serve as a signal to the bug to turn on virulence gene expression, a phenomenon described in many other pathogenic bacteria (14). Another important observation from this study was that prolonged exposure to iron-limiting conditions (>10 hours) leads to rapid death of exponential cultures, whereas stationary phase cultures were highly resistant, suggesting that this growth state might be most relevant in vivo.
Two recent studies examined the global transcriptional response to moderately low pH exposure (pH 5.0; refs. 15, 16). Both studies observed down-regulation of a number of outer membrane proteins, indicating a remodeling of the surface during acid exposure. Both studies also observed strong induction of ammonia-producing enzymes as expected. The first study observed induction of type 1 flagellar genes and confirmed with video microscopy that pH 5 exposure leads to enhanced motility. This result is consistent with the observation that in vivo pH is the most relevant cue for chemotaxis within the mucous layer (11). Interestingly, cagA and vacA were down-regulated and the repression of cagA expression was confirmed at the protein level. This indicates that acid may not be a major signal for virulence gene expression.
The two studies differed with respect to expression of the iron transport accessory proteins ExbB and ExbD. Whereas the first study found this operon induced, the second study found it repressed. Whereas neither study confirmed the gene array data for these genes by an independent method, repression of these transcripts is consistent with other work demonstrating a link between low pH and metal ion regulators where low pH induces expression of the nikR nickel-responsive transcriptional repressor (17). NikR represses its own transcription as well as the divergent exbBD, TonB operon. This results in lower iron uptake and down-regulation of the Fur transcriptional regulator. In support of this, Contreras et al. (18) observed that 35 of the 101 acid responsive genes in their study were dependent on Fur for their acid regulation. Furthermore, both fur and nikR mutant bacteria were attenuated in a mouse model of infection and the double mutant had an even stronger phenotype.
Whereas the above experiments provide evidence that H. pylori gene expression is more dynamic than originally thought, these studies were all done in vitro on broth-grown bacteria. A recent study used quantitative PCR to compare bacterial gene expressions in vivo using fresh biopsy specimens to parallel in vitro cultures after 36 hours (likely in stationary phase; ref. 19). They observed a 4 log range of expression values of the 37 genes tested in six patients and very good correlation between samples. When comparing in vitro with in vivo grown bacteria, they observed a high correlation but with 5-fold lower mRNA levels in the in vivo samples. The one gene that fell outside the 95% confidence interval was cagA, and it showed even lower expression during in vivo growth relative to in vitro growth. The authors suggest that the bacteria are primarily in stationary phase in vivo, highlighting the importance of the log/stat switch described above.
In summary, a variety of in vitro and in vivo studies have highlighted stationary phase gene expression as most relevant to bacterial survival in vivo. These studies also show that whereas acid exposure may be an important cue for chemotaxis of the bacteria within the stomach, iron and/or nickel limitation may be the major signal for induction of virulence gene expression.
Oxidative Stress
One group of genes that was induced during stationary phase in the microarray experiments described above was stress response genes. A hallmark of H. pylori infection is infiltration of neutrophils that produce reactive oxygen and nitrogen species. There has been much interest in mechanisms the bacteria use to counter these innate host defenses. Early work showed that the major proteins that cope with reactive oxygen species in other bacteria, catalase and superoxide dimutase, are essential for survival in mouse models of infection (20, 21). Recent work has focused on DNA damage that is induced by oxidative damage in both the bacteria and the host.
On the bacterial side, O'Rourke et al. (22) showed that HP0585, one of two predicted homologues of the Escherichia coli Endo III, is solely responsible for repairing oxidized pyrimidine residues. H. pylori mutant in this gene are more sensitive to oxidative stress induced by drugs or activated macrophages. Finally, bacterial mutants in this gene are attenuated for persistence during experimental infection of mice.
On the host side, Ladeira et al. (23, 24) investigated the extent of DNA damage in normal and infected gastric tissue using a single-cell comet assay. They found that DNA damage correlated with H. pylori infection and degree of gastritis. Whereas there was no significant difference between males and females, there were trends toward higher damage in males. Males have a higher incidence of gastric cancer than females. Interestingly, they observed significantly more damage in those >50 years old versus those <17 years old after controlling for degree of gastritis. A follow-up study correlated the presence of virulence genes with the degree of DNA damage, further establishing the link between highly pathogenic H. pylori strains and more severe disease.
These studies on the bacterial and host sides show that induction of DNA damage is an important byproduct of host defense and that the bacterium has evolved effective strategies to overcome this insult.
VacA
VacA was named for its dramatic activity on HeLa cells where it causes cell to fill with massive vacuoles derived from late endosomal membranes. Since its discovery in 1989, a vast array of activities have been linked to the molecule, including membrane insertion, anion conducting channel activity, alteration of transepithelial resistance, inhibition of antigen processing, and induction of apoptosis (25). Infection experiments in mice indicate that active toxin provides a selective advantage (26), but whether any of the reported activities are relevant during human infection remains a mystery in spite of a number of interesting recent studies.
One conundrum from the animal studies showing a colonization phenotype for vacA mutants was that this phenotype was discovered in a competition experiment with a mixed culture of wild-type and mutant bacteria. Because VacA is a secreted toxin, and purified toxin administered to the outside of cells reproduces all of the VacA-attributable phenotypes of intact bacteria, one would have expected the wild-type bacteria to trans-complement the mutant bacteria, but this was not the case. Ilver et al. (27), however, argue that the predominant mode of delivery of VacA is directly from the bacterial cell surface to epithelial cells in an elegant series of immunofluorescence experiments. A number of structure function studies have delineated residues in the amino terminal portion of the protein that are important for oligomerization and membrane insertion (28-30). One clinically relevant finding of these and other studies is that these sequences include the variable region defining the s1 and s2 alleles. In particular, the s2 allele, which is correlated with less severe disease during human infection, cannot insert into membranes, induce vacuolation or, as recently shown by Cover et al. (31), induce apoptosis. Further work on the apoptotic activity of VacA revealed that this activity does not involve caspase activation or induction of the mitochondrial permeability transition, but does involve an alteration of the proton motive force that precedes cytochrome c release (32). A potential role for VacA oligomerization has been revealed by an elegant study demonstrating that aggregation of Rab7-containing vesicles is required for vacuolation of cells (33).
In addition to progress made in elucidating the mechanisms by which known VacA phenotypes occur, two new activities have been suggested. Most research has focused on H. pylori and VacA interactions with epithelial cells, but Gebert et al. (34) have now shown that purified VacA can inhibit T-cell proliferation, although the mechanisms is unclear as intact bugs seem to inhibit proliferation by VacA-independent mechanisms.
Whereas the exact mechanisms of VacA entry into host cell is still not clear, it was shown some time ago to bind protein tyrosine phosphatase receptor type Z (Ptprz; ref. 35). Recent work has shown that when purified VacA is administered to wild-type mice, they get ulcers; on the other hand, Ptprz/ mice do not (36). Gastric cells cultured from the mutant animals show that Ptprz binding is not required for internalization or vacuolation by VacA, but the VacA binding to this receptor activates it and the downstream Git-1 signaling protein. Activation of this receptor by VacA causes cell migration in primary cultures of gastric epithelial cells from wild-type but not Ptprz/ mice. Finally, administration of pleiotrophin, the natural ligand for Ptprz, can cause ulceration in wild-type mice.
The overwhelming theme of VacA research seems to be that this protein is playing multiple roles in disease progression and probably affects multiple cell types in unique ways.
Adherence/BabA
Another virulence gene whose role in disease has been most firmly established by epidemiology studies is the Leb-binding protein adhesion BabA. BabA is part of a family of related outer membrane proteins and displays particular homology to the BabB outer membrane protein. The babA gene has been found to be variably present among strains (37) and recent work has shown that it can undergo phase variation, gene conversion, and sequence variation during human infection. Screening of a panel of 39 strains with two different single-chain fragment variable recombinant anti-BabA antibodies revealed that 18 (46%) strains expressed the protein (38). Among the strains expressing the protein, there was a large range in Leb-binding affinity. Sequence analysis of high-affinity and low-affinity binding genes revealed lots of polymorphisms and no obvious correlation between sequence and binding strength. Another study examined the binding properties of an even larger panel of clinical isolates (39). They defined two different binding classes: generalists and specialists. Generalists represent most strains worldwide and bind both Leb (on O blood group individuals) and Aleb (on A blood group individuals). Specialists are almost exclusively found in South American native populations and bind Leb only. Phylogenetic analysis of variable regions of BabA shows several clusters. Specialists fall in almost all clusters. By sequence analysis of housekeeping genes, these Peruvian strains look most like European strains, which are predominantly generalists. This led to a proposal that BabA is being constantly selected for its adherence properties and that populations with predominantly blood group O lose the ability to bind Aleb. A final study sought to measure changes in BabA during the course of infection (40). Using a Rhesus macaque infection model, they found loss of BabA expression and Leb-binding activity during experimental infection with a human isolate containing babA. This loss could occur by recombination of a second copy of a related gene, babB, into the babA locus or by phase variation in number of CT repeats in the 5' region of the gene, causing frameshift mutations. These data may support the idea of loss of BabA activity in the absence of strong selection for binding.
Arginase
In 2001, Gobert et al. (41) reported a role of H. pylori arginase on the inhibition of macrophage nitric oxide production due to depletion of L-arginine and subsequent impairment of the bacteriocidal activity of macrophages. Induction of macrophage apoptosis by activation of arginase II has also been observed upon in vitro incubation of macrophages with H. pylori (42). Recently, a new role for H. pylori arginase in the function of cells of the immune system has been described. Zabaleta et al. (43) have reported inhibition of T-cell proliferation and reduction of TCR CD3
-chain expression by H. pylori arginase. Knowing that L-arginine was an important modulator of T-cell function, they sought to investigate the role of H. pylori arginase in avoiding the immune response and found that H. pylori sonicates and live H. pylori were both able to decrease the proliferation of Jurkat T cells and freshly isolated human normal T lymphocytes. The decrease in proliferation was not due to induction of apoptosis or decrease in cell viability but rather interference with the signal transduction mechanisms required for normal functioning of T cells. In particular, tyrosine phosphorylation downstream of T-cell receptor activation was decreased probably due to the reduction of TCR CD3-
chain reexpression upon T-cell engagement. Isogenic H. pylori strains lacking the arginase gene were unable to interfere with T-cell proliferation. Furthermore, they suggest that bacteria/T cell contact is not required for this inhibitory activity. Because colonization of mice is not compromised in arginase mutants (44), the new results confirm a role of this enzyme in the ability of H. pylori to survive in the gastric mucosa rather than in the establishment of the infection.
CagA and the cagPAI
cagA is the last gene of the cag pathogenicity island (cagPAI). The CagA protein is translocated into epithelial cells through a type IV secretion system, also within the cagPAI. It has been long recognized that strains carrying the cagPAI and specifically able to translocate CagA into host cells are associated with the development of more severe disease (ulcer, cancer versus gastritis). Once CagA is translocated into epithelial cells, it remains associated with the host membrane and becomes tyrosine phosphorylated on carboxyl-terminal repeat motifs, Glu-Pro-Ile-Tyr-Ala (EPIYA motifs), by proteins of the Src family of tyrosine kinases. Phosphorylated CagA has been reported to induce cell signaling pathways resulting in altered spreading, migration, and adhesion of epithelial cells. The Ras/MEK/ERK and SHP-2 pathways are some of the pathways reported to be activated by cagA-positive strains, explaining observations of increased cell proliferation during H. pylori infection, a hallmark for a precancerous state.
Binding of CagA to the SHP-2 protein occurs through a carboxyl-terminal domain, near the tyrosine phosphorylation EPIYA motifs, is dependent on CagA phosphorylation and stimulates SHP-2 phosphatase activity in vitro (45). Recently, this association has also been shown to occur in human gastric mucosa (46). Interestingly, the interaction was not detected in the gastric mucosa from patients with intestinal metaplasia or cancer. CagA protein isolated from East Asia, where gastric cancer is more prevalent, has a distinct sequence at the region corresponding to the EPIYA motifs compared with the Western CagA. The East Asian sequence confers CagA stronger binding to SHP-2 than the Western sequence (45). Recently, Azuma et al. (47) showed the association of the East Asian sequence with gastric cancer in Japan by measuring CagA strain variation in two different areas of Japan with different gastric cancer risk. In Fukui, where the risk for gastric cancer is higher, all the isolated strains harbored the East Asian sequence, whereas in Okinawa 16% of strains were of the Western sequence type.
Investigations of the molecules and pathways CagA interacts with in epithelial cells have shown association of CagA with a large number of molecules, including the COOH-terminal Src kinase (Csk; ref. 48), the adaptor molecule Grb2 (49), and ZO-1 (50). CagA has also been reported to activate the c-Met receptor pathway (51), inactivate Src kinase, and dephosphorylate cortactin (52), highlighting its role as a docking/scaffolding protein able to recruit and modify the activity of multiple signaling molecules in host cells. The advantage this situation represents for the bacterium is still not clear, but shows how infection with strains able to translocate and phosphorylate CagA can alter the physiology of gastric epithelial cells.
The presence of CagA and the cagPAI has also been associated with changes in epithelial cell motility and morphology in vitro, the so-called "hummingbird" phenotype. Recently, these two phenotypes were genetically separated by showing that elongation of AGS cells required CagA phosphorylation and a functional cagPAI, but the induction of motility was cagPAI independent. These results suggest that induction of motility might be influenced by bacterial factors encoded outside of the cagPAI (53, 54).
Whereas the majority of work with the cagPAI has focused on epithelial cells, recent work showed that the cagPAI can modulate the activity of immune cells (2, 7). The role that cagA and/or the TFSS play in immune cell modulation are open areas of investigation that will further our understanding of H. pylori infection.
In summary, we have learned more about the mechanisms by which CagA modify the activity of epithelial cells by serving as a scaffolding protein able to interact and modify the function of a variety of molecules involved in cell-to-cell interactions, cell motility, and proliferation. Many of these interactions need to be confirmed in vivo. The role of cagPAI products in the modulation of the immune response is an open area of research with the potential to give us more insights into the mechanisms by which H. pylori evades the immune response as well as a better understanding of the ability of cagPAI+ strains to be more pathogenic.
| Conclusions |
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The elucidation of the most critical factors for bacterial persistence and those that induce damage will be useful for identifying those individuals infected with the most virulent strains and, therefore, at greatest risk for development of severe disease. Additionally, understanding of the mechanisms of action of some of these factors may lead to the identification of early markers for disease progression. The major challenge before us is to translate these biological observations into public health measures to lower the burden of gastric cancer.
| Footnotes |
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Received 10/26/04; revised 2/21/05; accepted 3/25/05.
| References |
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-chain (CD3
). J Immunol 2004;173:58693.This article has been cited by other articles:
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D. N. Baldwin, B. Shepherd, P. Kraemer, M. K. Hall, L. K. Sycuro, D. M. Pinto-Santini, and N. R. Salama Identification of Helicobacter pylori Genes That Contribute to Stomach Colonization Infect. Immun., February 1, 2007; 75(2): 1005 - 1016. [Abstract] [Full Text] [PDF] |
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