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Molecular and Genetic Epidemiology Section, Laboratory of Molecular Carcinogenesis [M. C. S., C. H. v. G., J. A. T.], Epidemiology Branch [J. A. T.], Biostatistics Branch [D. M. U.], and Laboratory of Computational Biology and Risk Analysis [R. M. L.], National Institute of Environmental Health Sciences, NIH, Research Triangle Park, North Carolina, 27709
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Abstract |
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 Top Abstract IntroductionMaterials and MethodsResultsDiscussionReferences |
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Introduction |
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TopAbstractIntroductionMaterials and MethodsResultsDiscussionReferences |
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Cigarette smoke is a rich source of chemical carcinogens and ROS.2 Chemical carcinogens include polycyclic aromatic hydrocarbons, aromatic amines and N-nitroso compounds, which can produce DNA bulky adducts that may lead to DNA damage (8) . ROS are present in both the gas-phase and the particulate matter (tar; Ref. 9 , 10 ) and include oxygen radicals, e.g., superoxide radicals (O2.) and hydroxyl radicals (OH.), and some derivatives of O2 that lack unpaired electrons, e.g., hydrogen peroxide (H2O2) and hypochlorous acid (HOCl; Ref. 11 ). One report indicated that 5 x 104 radicals are generated with each inhalation from a cigarette (10) . Furthermore, through endogenous enzymatic reactions mediated by bacteria and inflammatory cells, N-nitroso compounds, such as those in cigarette smoke, can generate nitric oxide radicals that can induce oxidative damage (12) . This could explain the finding of infection and inflammation as risk factors for bladder cancer (13) . The accumulation of ROS leads to oxidative stress, which is a risk factor for cancer development (14) . ROS can initiate lipid peroxidation, oxidize proteins, and cause damage to DNA indirectly or directly (9 , 15 , 16) . Indirect damage includes inactivation of target enzymes, such as those involved in DNA synthesis (17) . Direct DNA damage includes DNA strand breaks, creation of abasic sites, and base adduct formation, such as thymine glycol, 5-hydrozymethyluracil and 8-hydroxy-2-deoxyguanosine (15 , 17) . Up to 4 x 105 oxidatively altered DNA base residues are introduced per day in each cell (17 , 18) .
Bulky adduct lesions induced by chemical carcinogens are repaired through the nucleotide excision repair (NER) pathway (19) . Base damage and DNA single strand breaks are repaired through the BER pathway (20) . This pathway is a multistep process that requires the activity of several proteins (17 , 20) . The XRCC1 protein is an important component of BER, because it serves as a scaffold for two other proteins, DNA ligase III and POLB and also serves as a single-strand break sensor by its interaction with PARP (21, 22, 23) . XRCC1 has been mapped to human chromosome 19q13.2–13.3 (24 , 25) , and three polymorphisms that lead to amino acid substitutions have been described in codon 194 (exon 6, base 26304 C to T, Arg to Trp), codon 280 (exon 9, base 27466 G to A, Arg to His), and codon 399 (exon 10, base 28152 G to A, Arg to Gln; Ref.26 ). All three of the polymorphisms occur at residues that are conserved across hamster, mouse, and human (27) , but their functional consequences remain unknown.
Assays that measure DNA repair capacity suggest that this function can vary widely among individuals. Cancer patients have lower DNA repair capacities than healthy controls (reviewed in Ref. 28 ). This finding supports the hypothesis that variants in DNA repair genes could affect cancer susceptibility.
In the present study, we hypothesized that XRCC1 polymorphisms could affect the capacity of bladder cells to repair ROS-induced DNA damage, and consequently influence bladder cancer risk. Using a case-control study, we tested whether these polymorphisms were associated with bladder cancer risk and examined gene-environment interactions, by testing whether XRCC1 polymorphisms modified the risk effect of cigarette smoking, a measure of ROS exposure.
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Materials and Methods |
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TopAbstractIntroductionMaterials and MethodsResultsDiscussionReferences |
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Genotype Analysis by PCR-RFLP.
DNA was extracted from peripheral blood lymphocytes by standard
methods, resuspended in TE buffer (10 mM Tris, 1
mM EDTA), and frozen until use. A multiplex PCR assay was
used to amplify fragments surrounding the codon 194 and 399
polymorphisms, as described previously (30)
. These PCR
products were digested with MspI, resolved in 3% Metaphor
agarose gels (FMC Bioproducts, Rockland, ME), and stained with ethidium
bromide. A separate PCR reaction was carried out to amplify the
fragment containing the codon 280 polymorphism, as described previously
(30)
. These PCR products were digested with
RspI, resolved in 2% 3:1 NuSieve agarose gels (FMC
Bioproducts), and stained with ethidium bromide.
Statistical Analysis.
We used standard methods for 2 x k contingency tables,
including Fisher’s exact test as appropriate, when analyzing
categorical variables without adjustment for covariates
(31)
. These analyses included comparing genotype
frequencies between cases and controls as well as examining association
of XRCC1 polymorphisms with tumor grade, tumor stage, or age at
diagnosis. We checked for consistency of genotypic frequencies among
controls with those expected from the Hardy-Weinberg law using
estimates of the disequilibrium coefficient as described by Weir
(32)
. When adjusting for age, sex, or ethnicity and when
examining interactions between polymorphisms and smoking, we used
standard logistic regression methods (33)
. We conducted
interaction analyses on the basis of a multiplicative scale. We had too
few blacks in our study for reliable inference using their data
alone; therefore, we combined blacks and whites in analyses that
included ethnicity as a covariate. We examined categorized and
continuous versions of pack-years and total number of years-smoked as
measures of smoking exposure for gene-environment interaction analyses.
As we had previously observed (6)
, years of smoking was
more predictive of bladder cancer risk than other measures of smoking
dose; therefore, we present results for that variable.
To examine the combined effects of the continuous smoking variable and the XRCC1 polymorphisms, we followed an approach that we have used previously (6) . This approach fits a series of logistic regression models and compares them to test relevant hypotheses. We used dichotomous genotype variables in these analyses. In the full regression model, log odds of disease was modeled as a separate straight line with respect to years of smoking for each genotype. Under this model, differences between the slopes of the lines represent genotype-exposure interactions, and differences between the intercepts represent the genotype effect among nonsmokers. A two-degree of freedom likelihood ratio test of whether the polymorphism has any effect on risk was made by comparing the full model’s likelihood to that of a model in which both genotypes are represented by a single line. A one-degree of freedom test, focused on interaction alone, compares the likelihood of the full model to that of a parallel-lines model in which both lines have a common slope but separate intercepts. All of the tests were two-tailed. All of the analyses were done using the statistical package Egret for Windows (Cytel Software Corporation, Cambridge, MA).
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Results |
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TopAbstractIntroductionMaterials and MethodsResultsDiscussionReferences |
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. However, cases did have a slightly higher mean age at interview
compared with controls. Cases were more likely to have ever smoked than
controls (OR adjusted for age and sex, 4.0; 95% CI, 2.4–6.6). On
average, cases smoked 15.9 more pack-years than controls and smoked for
12.7 more years.
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). This tendency was also observed among blacks (95 versus
77%; P = 0.13). The age-, sex-, and ethnicity-adjusted
OR for individuals with the variant codon 194-CT genotype
compared with those with the common CC genotype was 0.6
(95% CI, 0.3–1.0; P = 0.06) for whites and blacks
combined. These results suggest a slight protective effect of the codon
194-CT genotype, or conversely a moderate adverse effect of
the codon 194-CC genotype, on bladder cancer risk.
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. Thus, we saw little evidence of an
association between the codon 280 polymorphism and bladder cancer risk.
The codon 399-A allele frequency among white cases was
0.34 and 0.36 among controls. Among blacks, the allele frequencies were
0.26 and 0.15, respectively. We found no significant differences
between the observed genotypic frequencies among white controls and
those expected from the Hardy-Weinberg law (P = 0.92).
We found a slight decrease in risk for those individuals who carried
the codon 399-AA genotype compared with codon
399-GG genotype, although this difference was not
statistically significant (age-, sex-, and ethnicity-adjusted OR, 0.7;
95% CI, 0.4–1.4; P = 0.35, for whites and blacks
combined; Table 2
). Given that the adjusted OR for the codon
399-GA genotype compared with codon 399-GG was
1.1 (95% CI, 0.7–1.6) for whites and blacks combined, we grouped the
GG and GA genotypes for further analysis.
Combined Analysis of Codon 194 and 399 Polymorphisms.
A combined analysis undertaken to distinguish the relative
contributions of the polymorphisms in codons 194 and 399 to bladder
cancer risk suggested that the codon 194-CT and the codon
399-AA genotypes have separate protective effects. Subjects
that carried the "protective" codon 194-CT genotype but
not the protective codon 399-AA genotype had an OR of 0.6.
The same result was observed for subjects that carried the codon
399-AA genotype but not the codon 194-CT genotype
(Table 3)
. We could not examine the joint contribution of these two variants to
risk, given the lack of subjects who were both homozygous for the codon
399-A allele and carried the codon 194-T allele.
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. Although decreasing levels of smoking consistently decreased bladder
cancer risk, this effect was more pronounced among codon
194-CT subjects. For example, individuals who smoked 1–34
years and carried the codon 194-CT genotype had an OR of 0.2
(95% CI, 0.1–0.6; whites and blacks combined), whereas those who had
the codon 194-CC genotype had an OR of 0.6 (95% CI,
0.3–0.9; whites and blacks combined) relative to the reference group.
Similar results were found using categories based on pack-years. These
results suggest that the codon 194-T allele may be more
protective for bladder cancer in lower-dose smokers than in higher-dose
smokers; however, tests for multiplicative interaction were not
statistically significant (Table 4)
. We also looked for the presence of
codon 194 genotype and smoking interaction using years of smoking as a
continuous variable and the logistic regression models described in
"Materials and Methods." A test for any codon 194 association with
risk (i.e., combined main effect and interaction) suggested
that codon 194 did affect risk
(
2
2df = 5.76;
P = 0.06). A test of multiplicative interaction alone
was not statistically significant
(2
1df = 2.38;
P = 0.12). Thus, with these data, we were unable to
declare that the observed difference in the codon 194 protective effect
between higher- and lower-dose smokers was statistically significant.
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), whereas those who had the codon
399-GG+GA genotype had an OR of 0.5 (95% CI, 0.3–0.9;
whites and blacks combined). Similar results were found using
categories based on pack-years. These results suggest that the codon
399-A allele might be more protective for bladder cancer in
lower-dose smokers than in higher-dose smokers; however, the test for
multiplicative interaction was not statistically significant (Table 4)
.
Unlike the result for codon 194, applying years of smoking as a
continuous variable provided no significant evidence that codon 399
influenced risk (2
2df =
3.15; P = 0.21). A test that focused on interaction
alone yielded a smaller P but was also nonsignificant
(2
1df = 1.83;
P = 0.18). Our analysis of codon 280 showed no consistent evidence of gene-exposure interaction. However, given the low variant allele frequency we have the least power to examine interaction.
XRCC1 Polymorphisms and Prognosis-associated
Variables.
We examined whether cases with and without each of the variant
genotypes differed for age at diagnosis, using the median age of
diagnosis (63 years) as the cutoff point. We did not find statistically
significant differences among cases with and without the codon
194-CT genotype (P = 0.61), the codon
399-GG+GA genotypes (P = 0.91) or the codon
280-GA+AA genotypes (P = 0.54). We also
found no statistically significant differences for the variables grade
and stage among cases with and without the codon 194-CT
genotype (P = 0.63 for grade and 0.63 for stage), the
codon 399-GG+GA genotypes (P = 0.97 for
grade and 0.43 for stage) or the codon 280-GA+AA genotypes
(P = 0.97 for grade and 0.56 for stage).
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Discussion |
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TopAbstractIntroductionMaterials and MethodsResultsDiscussionReferences |
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The XRCC1 codon 194 and codon 280 polymorphisms are located in the linker region that separates the DNA POLB interacting domain from the PARP-interacting domain (27 , 35) . The codon 399 polymorphism is located on the COOH-terminal side of the PARP-interacting domain, within the BRCT1 domain (23) . BRCT domains are homologous to the COOH-terminal region of the breast cancer susceptibility gene BRCA1 and are thought to mediate specific protein-protein interactions. BRCT domains are present in a number of DNA-damage response proteins, including p53 (43) . Although all of the three polymorphisms lead to amino acid substitutions, there is no direct data on their functional consequences.
We found some support for the hypothesis that the XRCC1 polymorphisms affect bladder cancer risk. The codon 194 variant allele provided a modest protective effect, of borderline statistical significance, and the more frequently observed codon 399 variant also appeared to provide protection, although this finding was not statistically significant. We did not observe any individuals who carried the protective genotype at both loci. Interestingly, the variant alleles at codons 194 and 399 each had a protective effect in the absence of the other, suggesting that they may independently affect risk. The codon 280 polymorphism showed relatively little association with risk, although the low frequency of this variant allele limited our power to detect a difference.
When we considered smoking status as a surrogate for increased oxidative damage, the protective effects of the codon 194 and codon 399 genotypes could be consistently demonstrated in both the moderate smoking strata and the nonsmoking strata but not in the strata comprised of heavy smokers. This finding held whether we used pack-years, years-smoked, or other smoking classification schemes, although such classifications are highly correlated. Formal tests for gene-smoking interaction were suggestive, although not statistically significant. Such an interaction is biologically plausible; although the protective effect of XRCC1 variant alleles in repairing oxidative damage might be evident in people with low levels of endogenous and exogenous oxidative damage, subtle differences in repair efficiencies between the common and variant alleles might be overwhelmed by the high levels of oxidative damage present in heavy smokers. Similar patterns of genotype effects at low smoking exposure but not at high smoking exposure have been observed for GSTM1 and lung cancer risk (44) and CYP1A1 (45) , in which subtle genotypic differences in detoxification are made irrelevant at high dose.
We found that these polymorphisms did not affect age of onset of bladder tumors, or the aggressiveness of the disease, given the lack of association with grade and stage of the tumors. Other bladder cancer risk factors could modify the effect of these polymorphisms, such as family history of cancer (46, 47, 48) or the presence of other genetic susceptibility markers, such as variants for metabolism enzymes that we have previously characterized for this study (6 , 29) . The activation and detoxification of carcinogens and ROS, as well as the repair of the damage induced by these compounds, are important aspects in carcinogenesis. Both are under genetic control, and there is increasing evidence of genetic variation of these pathways in the human population. Therefore, integrating information on allelic variants of these genes may be useful in determining groups of individuals at highest risk from environmental exposure. In the case of XRCC1, the analyses of possible interactions with GSTM1 polymorphisms are appropriate given the role of this enzyme in detoxifying products of oxidative stress (49) . We are currently conducting analyses to investigate family history and multiple gene effects on exposure-related cancer risk.
A study by Sturgis et al. (50) of 203 cases of head and neck cancer and 424 controls reported increased risk for the codon 194-CC genotype (OR, 1.3; 95% CI, 0.8–2.2). Recalculation of this result with the codon 194-CC group as the reference gives an OR of 0.8 (95% CI, 0.5–1.3) for codon 194-CT+TT subjects, comparable with our result for bladder cancer. However, their data showed evidence of increased risk associated with the codon 399 homozygous variant (AA) genotype compared with those with one or more copies of the common allele (OR, 1.6; 95% CI, 1.0–2.6). In a study by Lunn et al. (30) , Taiwanese women who had the codon 399-GA or AA genotype were more likely to have detectable levels of aflatoxin B1-DNA adducts than women with the GG genotype (OR, 2.9; 95% CI, 1.3–6.4). Women who carried the codon 194-CT or TT genotypes were less likely to have detectable levels of adducts, although this association was not statistically significant (OR, 0.6; 95% CI, 0.3–1.3). In this same study, an association was found for carriers of the codon 399-AA genotype and increased glycophorin A mutations, an association that was stronger among smokers. In a study by Duell et al. (51) , healthy subjects who carried the codon 399-AA genotype showed slightly higher mean sister chromatid exchange (SCE) frequencies. This increase was more pronounced among current smokers (OR, 1.4; 95% CI, 1.2–1.7) compared with never smokers who carried the codon 399-GG genotype. Also, in this same study, an association was found between the presence of polyphenol DNA adducts and one or more copies of the codon 399-A variant allele. This association was more evident among subjects older than 65 years, which suggested a possible interaction with age.
Given the lack of direct functional measures of DNA repair capacity associated with the different polymorphisms, it is difficult to integrate the sometimes divergent results of the existing studies on XRCC1. One of the limitations of our study is the use of hospital-based controls, which could introduce a possible selection bias if the clinical conditions of these subjects were associated with genotype. However, we find that possibility unlikely in our study. The most common diagnoses among controls were impotence and incontinence, and there is no evidence to suggest that DNA repair genes might be involved in the etiology of these conditions. In addition, the allelic frequencies observed among our white control group are remarkably similar to those observed in both the hospital-based study by Sturgis et al. (50) and to population-based studies by Lunn et al. (30) and our own group,3 which suggests that there was no apparent selection bias in the control group.
If the observation that XRCC1 variant alleles in codon 194 and 399 decrease bladder cancer risk is true, we can suggest three alternative hypotheses to interpret these findings: first, that these gene variants independently confer improved function to the XRCC1 protein. Although one might expect that better functioning alleles would be the more common, the fact that their frequency in the population is lower than the "less protective" alleles could be a reflection of recent appearance during evolution or the absence of a selective advantage to reproductive fitness. A second hypothesis could be that these variants diminish the efficiency of the XRCC1 protein but still provide decreased risk from cancer. Under this scenario, cells with excessive oxidative damage that carry such variants would have decreased ability to repair DNA damage and might be more likely to undergo apoptosis or senescence. Such decreased efficiency could be an "advantage" if it avoided the transmission and clonal expansion of mutations that could arise during BER, which is an error-prone repair process. A third hypothesis is that another polymorphic gene might be in linkage disequilibrium with XRCC1. Interestingly, the ERCC2 (XPD) gene also maps to chromosome 19q13.2 (25 , 52) adjacent to XRCC1, which maps to 19q13.2–13.3 (24 , 25) . ERCC2 is involved in nucleotide excision repair of bulky adducts, such as those induced by many of the carcinogens in cigarette smoke. We are currently examining possible associations between ERCC2 polymorphisms and bladder cancer risk.
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Acknowledgments |
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Footnotes |
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1 To whom requests for reprints should be
addressed, at National Institute of Environmental Health Sciences,
P. O. Box 12233, Research Triangle Park, NC 27709. Phone (919)
541-4631; E-mail: taylor{at}niehs.nih.gov 
2 The abbreviations used are: ROS, reactive oxygen
species; BER, base excision repair; PARP, poly(ADP-ribose) polymerase;
POLB, polymerase ß; OR, odds ratio; CI, confidence interval.
3 C. H. van Gils, R. M. Bostick, M. C. Stern,
and J. A. Taylor. Polymorphisms in DNA repair gene
XRCC1, diet, and prostate cancer risk, manuscript in
preparation.
Received 7/ 5/00; revised 12/ 1/00; accepted 12/ 2/00.
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References |
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